Single-Nucleotide Polymorphism Phylotyping of Escherichia coli
نویسندگان
چکیده
منابع مشابه
Single-nucleotide polymorphism phylotyping of Escherichia coli.
We describe a rapid and easily automated phylogenetic grouping technique based on analysis of bacterial genome single-nucleotide polymorphisms (SNPs). We selected 13 SNPs derived from a complete sequence analysis of 11 essential genes previously used for multilocus sequence typing (MLST) of 30 Escherichia coli strains representing the genetic diversity of the species. The 13 SNPs were localized...
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The current pathogen-typing methods have suboptimal sensitivities and specificities. DNA sequencing offers an opportunity to type pathogens with greater degrees of discrimination using single nucleotide polymorphisms (SNPs) than with pulsed-field gel electrophoresis (PFGE) and other methodologies. In a recent cluster of Escherichia coli O157:H7 infections attributed to salad bar exposures and r...
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Background Single nucleotide polymorphism (SNPs) are considered as one of the underlying causes of male infertility. Proper sperm chromatin packaging which involves replacement of histones with protamines has profound effect on male fertility. Over 20 SNPs have been reported for the protamine 1 and 2. MaterialsAndMethods The aim of this study was to evaluate the frequency of two previously repo...
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Corresponding author. Mailing address: Department of Veterinary Microbiology and Pathology, 17 Washington State University College of Veterinary Medicine, P. O. Box 647040, Pullman, WA 18 99164-7040. Phone: (509) 335-6075. Fax: (509) 335-8529. E-mail: [email protected]. 19 AEM Accepts, published online ahead of print on 6 September 2013 Appl. Environ. Microbiol. doi:10.1128/AEM.02173-13 Co...
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ژورنال
عنوان ژورنال: Applied and Environmental Microbiology
سال: 2005
ISSN: 0099-2240,1098-5336
DOI: 10.1128/aem.71.8.4784-4792.2005